Fix misc errors

emacs/init.el

@@ -741,7 +741,6 @@ EMACS-ALTERNATIVE is the Emacs equivalent (e.g., 'C-s')."
   (org-special-ctrl-a/e 'reversed)
   (org-hide-emphasis-markers t)
   (org-use-speed-commands t)
-  (add-to-list 'org-speed-commands '("h" . org-fold-hide-sublevels))
   (org-use-fast-todo-selection 'expert)
   (org-todo-keywords '((sequence "TODO(t)" "BLOCKED(b)" "|" "DONE(d)")))
   (org-use-property-inheritance '("STYLE"))
@@ -751,12 +750,20 @@ EMACS-ALTERNATIVE is the Emacs equivalent (e.g., 'C-s')."
       ((agenda "" ((org-agenda-span 1)))
        (todo "TODO" ((org-agenda-skip-function '(org-agenda-skip-entry-if 'scheduled 'deadline))))))))
   :config
+  (add-to-list 'org-speed-commands '("h" . org-fold-hide-sublevels))
+
   (defun my/org-agenda-today ()
     "Show org agenda for today only."
     (interactive)
     (org-agenda nil "d"))
 
-  (add-hook 'org-after-todo-state-change-hook #'org-save-all-org-buffers))
+  (defun my/org-save-current-buffer ()
+    "Save the current Org file, including when editing an indirect buffer."
+    (with-current-buffer (or (buffer-base-buffer) (current-buffer))
+      (when (and buffer-file-name (buffer-modified-p))
+        (save-buffer))))
+
+  (add-hook 'org-after-todo-state-change-hook #'my/org-save-current-buffer))
 
 (use-package org-agenda
   :bind (:map org-agenda-mode-map
@@ -767,8 +774,7 @@ EMACS-ALTERNATIVE is the Emacs equivalent (e.g., 'C-s')."
   :config
   (add-hook 'org-mode-hook (lambda () (org-bullets-mode 1))))
 
-;; Preload org-mode (and warm up text-mode hooks like jinx) after
+;; Preload Org and its mode hooks after packages are available.
-;; packages are available on the load-path
 (add-hook 'emacs-startup-hook
           (lambda ()
             (with-temp-buffer
@@ -777,9 +783,9 @@ EMACS-ALTERNATIVE is the Emacs equivalent (e.g., 'C-s')."
 (defun my/org-clear-all ()
   (interactive)
   (let ((ast (org-element-parse-buffer))
-        ;; Temporarily disable org-save-all-org-buffers
+        ;; Save only once after all TODO states have been cleared.
         (org-after-todo-state-change-hook
-         (remove #'org-save-all-org-buffers
+         (remove #'my/org-save-current-buffer
                  org-after-todo-state-change-hook)))
     ;; Iterate over all headlines in the parsed AST
     (org-element-map ast 'headline
@@ -789,7 +795,7 @@ EMACS-ALTERNATIVE is the Emacs equivalent (e.g., 'C-s')."
           (goto-char (org-element-property :begin hl))
           (org-todo ""))))
     ;; Save once at the end
-    (org-save-all-org-buffers)))
+    (my/org-save-current-buffer)))
 
 ;;;; Screenshots for games
 ;; Steps to set up:
@@ -1145,7 +1151,7 @@ any directory proffered by `consult-dir'."
         eshell-prompt-regexp eshell-p10k-prompt-string))
 
 (use-package eshell-syntax-highlighting
-  :after eshell-mode
+  :after esh-mode
   :ensure t
   :config
   (eshell-syntax-highlighting-global-mode +1))